In an excellent piece, Jerry Coyne laments the lack of Scientific literacy in our technological age.
Science simply doesn't deal with hypotheses about a guiding intelligence, or supernatural phenomena like miracles, because science is the search for rational explanations of natural phenomena. We don't reject the supernatural merely because we have an overweening philosophical commitment to materialism; we reject it because entertaining the supernatural has never helped us understand the natural world. Alchemy, faith healing, astrology, creationism, none of these perspectives has advanced our understanding of nature by one iota.
Scientific truths are facts agreed on by all observers using scientific methods. The formula for water is H2O, the Earth is 4.6 billion years old, and the speed of light is 186,000 miles per second. These are matters that can be verified empirically by any scientist, be she Muslim, Catholic, or Hindu.
The religious conviction that "man" is unique in ways that really matter is compelling in many ways, surely our language, art, music, and science itself are unique products of life on this planet, but holding our uniqueness to be a dogma immune to scientific analysis is an arrogant, and ultimately foolhardy, declaration of authority.